SNP Profiles matching EQX Z

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_Input profile	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
1._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
2._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
3._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
4._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
5._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
6._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
7._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
8._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
9._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
10._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
11._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
12._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
13._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
14._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
15._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
16._RUQ_109	_	AG	CC	CT	_	_	_	GG	_	_	_	CC	AA	_
17._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AA	CC	AA	CC
18._RUQ_109	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	_	CC	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
1._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
2._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
3._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
4._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
5._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
6._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
7._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
8._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
9._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
10._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
11._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
12._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
13._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
14._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
15._GC-01-055-3-10	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA	AA
16._RUQ_109	_	_	_	CC	CC	GG	_	CT	CC	CG	GG	CC	AA	AA
17._EQX_/Z_[CHA]	AT	CG	CC	CC	CC	GG	GG	CT	CC	CG	GG	CC	AA	AA
18._RUQ_109	AT	CG	CC	CC	CC	GG	GG	CT	CC	CG	GG	CC	AA	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
1._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
2._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
3._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
4._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
5._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
6._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
7._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
8._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
9._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
10._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
11._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
12._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
13._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
14._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	_	AC	AT	CG	X_X	X_X	X_X
15._GC-01-055-3-10	GG	AA	CC	AA	CC	AC	CC	_	AC	AT	CG	X_X	X_X	X_X
16._RUQ_109	_	-	CC	AA	CC	AC	CC	GT	CC	_	_	X_X	X_X	X_X
17._EQX_/Z_[CHA]	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X
18._RUQ_109	AG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X	X_X

Input profile: EQX_/Z_[CHA]

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Mars Center for Cocoa Science, Brazil

Location: 1310 12 > F

Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 3 > FP

Dapeng Zhang, 2016

2._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 13 > F

Dapeng Zhang, 2016

3._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 15

Dapeng Zhang, 2016

4._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 14

Dapeng Zhang, 2016

5._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 10

Dapeng Zhang, 2016

6._EQX_/Z_[CHA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP1

8._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

10._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

11._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

12._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

13._EQX_/Z_[CHA] GC-01-055-3-10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

14._EQX_/Z_[CHA]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 7 > FP

Dapeng Zhang, 2016

15._EQX_/Z_[CHA] GC-01-055-3-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

16._EQX_/Z_[CHA] RUQ_109

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._EQX_/Z_[CHA]

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 Y9

Dapeng Zhang, 2016

18._EQX_/Z_[CHA] RUQ_109

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25